rs32620427 SNP Detail

Summary

• ID
  rs32620427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35885159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGACTT TGCCTGGAGG
  TGGCAGTATT CTCCAGTCAC ACTGACCAGG AACTTGAGAG TGGGGACTTG ATTGGGAACA
  GGTGGTTTCA GATGAAGTTG ACCTCCGTAG GGCGCGGTCC TGTTGGATGT TGGATTAGAG
  TGGTCCCAAT TAGACTAGGT GGTTGTGCCA GATTAAAGTG ATGTCTCTGC CTGGTGCCTG
  R
  GGTTTCTCCA GAGAACAAGA CACACAGAAG AAGAGGACAT ATGACACAGA AGCAGGGGCC
  ATTCAGGGAC AAGCAGGGGC TGGAAGAAGT GGAAGAGACC CTGCCTTGGC AACTCTGGAG
  GCAGCACCCT TGTCTCTGAC TTCTGGCTTT CAAACCCTAA GAGAACAAGT GTGTCGTAGT
  TTGTTATGGC AGCCATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689615	NES10236378	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32620427					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689615	NES10236378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35885159 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	171 bp distal
Rr609995	regulatory region 609995	721 bp proximal
Rr609996	regulatory region 609996	1451 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	593 bp upstream
Tssr50711	transcription start site region 50711	1192 bp downstream
Tssr50712	transcription start site region 50712	1207 bp downstream
Tssr50713	transcription start site region 50713	1233 bp downstream
Tssr50714	transcription start site region 50714	1273 bp downstream
Tssr50715	transcription start site region 50715	1445 bp downstream
Tssr50716	transcription start site region 50716	1475 bp downstream