rs32620431 SNP Detail

Summary

• ID
  rs32620431
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:35884598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCATT GAGAGCCCAA
  ATGCTGCCAC AGGGAGGAAG TAGGCACTGC CTTACTTGCA TAGAGCCCCC TCCTCCTTGC
  ACGGTCCTCC CTCCACGAGC TTGCTTGGCC GCTGGCTCCA GCAGCAGCCC AGCCCCAGGC
  AGTGTCCAGA AGCCTCAAAG GTACATTTGC TGAGTTCAAG CACCCCAAAG CGGCTGCCTG
  M
  AGAGTTTCTT TTCAGCCTTT GTCTTCTGCC CAGGTGGCAG AAGCATCAGG TGTCCCCATG
  TAAGCCACCC CAGGCTCTGA CCTCCAACGC ACATCTAGTT TACTGCTGGA ACATGGAGAC
  CCAGGGCCAA TCTCAGTGGA GGGTGAAATG TTCTATGCCT CAGTTTACCC ACCCATAAAA
  TGAGAACAAA AACACCTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689619	NES10236506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32620431					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689619	NES10236506	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35884598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr609994	regulatory region 609994			369 bp proximal
Rr609995	regulatory region 609995			1282 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1			Intron
				Noncoding-Transcript-Variant
Tssr45957	transcription start site region 45957			1154 bp upstream
Tssr50711	transcription start site region 50711			1753 bp downstream
Tssr50712	transcription start site region 50712			1768 bp downstream
Tssr50713	transcription start site region 50713			1794 bp downstream
Tssr50714	transcription start site region 50714			1834 bp downstream