rs32621214 SNP Detail

Summary

• ID
  rs32621214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35883972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACCAGA GGCCTGGCAT
  GGTCCAGTTC TCAACAACAC AGGGACAGAA GTATGTACCA AGTCTGCCCT CCTGTCTGCC
  TATCTTAAGA CACCATCTCA GCTGGTCATG CCTGAGATCT TCCAGAGTTT GGCCCTGTCA
  GCCTGACCCC AGCCCAAGTC CTGCTTGAGC CTGGACTTTT GTCCTTCCCT GACTTGTTCT
  R
  CCAAAACACC CTGGTTCCTA CCATTGCAGA GACCCACTGT CTTGCCCAGG TCTGTGAGGA
  CCAGAAGGTA CACACCCAAG TGGTAGGAAC CAGAAAACCT CATTTTCTCT GGTATAACTT
  CAGGGCCTTC AACCAAGCAC TTGGTCCAGT CTCTTGATGT GTGAGGTCCT AGTTTGTAGG
  GTCTGTGGTT GCCAATCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47689623	NES10236504	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32621214					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689623	NES10236504	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35883972 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	995 bp proximal
Rr609995	regulatory region 609995	1908 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	1780 bp upstream