rs32622505 SNP Detail

Summary

• ID
  rs32622505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CCGGCGTCGG CCCGCAGCAA
  Y
  GAGCCCGCGT CCGGGGCCGC AACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45171932	mCV25366582	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss145743756	ENSMUSSNP712694	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32622505					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi867	CpG island 867			within coordinates
Dhx9	DExH-box helicase 9			Intron
				Noncoding-Transcript-Variant
Rr396394	regulatory region 396394			25 bp upstream
Rr396395	regulatory region 396395			1603 bp upstream
Rr420681	regulatory region 420681			1962 bp distal
Rr420682	regulatory region 420682			within coordinates
Rr420683	regulatory region 420683			1242 bp distal
Rr420684	regulatory region 420684			19 bp proximal
Rr420685	regulatory region 420685			103 bp proximal
Rr420686	regulatory region 420686			1425 bp proximal
Tssr9459	transcription start site region 9459			574 bp downstream
Tssr9460	transcription start site region 9460			281 bp upstream
Tssr14270	transcription start site region 14270			144 bp downstream
Tssr14271	transcription start site region 14271			176 bp downstream
Tssr14272	transcription start site region 14272			189 bp downstream