rs32622753 SNP Detail

Summary

• ID
  rs32622753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149717465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTGTGCT GAGTTAGGTC
  ATCTGTGCTG AGTCACCTCA TTGCTGAGTC ACCTGTGCTG AGTCACCTCA TTGCCTTCTC
  TTCTCTCCCC CGTTCTTTGG TGCAGTAGTT CCAGTTCTAG AAATTTATCC TTAGGTCAGA
  ATCATCAGAC ACATAGATGC TCAGTCCCTG TCCCAGAGAG AGGACTAAGT AAGTTACATC
  R
  TATCTGTGCA GTGAACTGCT ATGCAGCCAC TTTAAGCTGT GCTATAGAAG CATAAGAAGC
  AGGTACGTAT GTATTGCAGA TACAGCAGGA TTCCAGTTTA ATAAGCACAT TGTGGGCTGG
  AGGTGTGCCA GGGACCAGCC TCGGCTTGGA GAGGGGTACT GAGGAAGGGG TGTGTGGGAA
  CAGAGAAAGA AACAACTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46706430	NES11010949	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss148037115	ENSMUSSNP3808313	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32622753					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46706430	NES11010949	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149717465 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	66 bp downstream
Rr103738	regulatory region 103738	within coordinates
Tssr40351	transcription start site region 40351	1683 bp upstream