rs32623423 SNP Detail

Summary

• ID
  rs32623423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119982808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AACAAATAAA TACAAGTGGA
  Y
  CCCCATGGCT CAGGCAAGCC TGCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45171755	mCV22772777	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145310742	ENSMUSSNP6160784	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss319931530	CHEV_1_121951655	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32623423					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119982808 () rs orientation: forward

Symbol	Name	Function Class
Rr30107	regulatory region 30107	within coordinates
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	155 bp upstream
Tssr8397	transcription start site region 8397	171 bp upstream