rs32624676 SNP Detail

Summary

• ID
  rs32624676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149718516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCATGT TTTCAGGGTT
  CCTTCCCACA GCCTTTTAAA GGCTGTCCAT ATATGTGCAT ACCCATACAC ATGCATGCCC
  ACATACATGC AAACATGGAC ACACATGCAC ACACCACTCT TTTATATATT CATAAAAAGG
  GATAGAAGTG TTTACACACA AAAGTGTATA TTTGGGCGGG AACATCTAAA GTAATTTTGT
  K
  GTTGTTTGTT TTGAGATAGG GTCTCACTGC ATAGCTTTGG CTAGCCTGAC TCTCACTCTG
  TAATCCAGGC AATCTGAATG CACAGAGATG TCTGTCTTTG TCTCTGCCTC CATAGGCCTG
  TGTACCATGC CTGGCTAGGT TTTATCTTCT TCATTCTTCT CCTTAAAACA GAAAATCCAC
  AGTTTGTGTG TGTGTGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46706445	NES11010930	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32624676					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46706445	NES11010930	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149718516 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	within coordinates
Rr103738	regulatory region 103738	within coordinates
Tssr40351	transcription start site region 40351	632 bp upstream
Tssr40352	transcription start site region 40352	1181 bp upstream