rs32625214 SNP Detail

Summary

• ID
  rs32625214
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135162204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA ATGCAGGGCA TAGCATCCTC
  S
  TCAGAGTGAC TCCCATAGTG TCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45672144	mCV25168404	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss147546892	ENSMUSSNP5668880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
ss321352225	CHEV_4_134990808	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32625214					SNP	C	G	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135162204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	340 bp distal
Gm69862	predicted gene, 69862	within coordinates
Rcan3	regulator of calcineurin 3	1050 bp upstream
Rr602030	regulatory region 602030	1051 bp distal
Rr602031	regulatory region 602031	954 bp distal
Rr602032	regulatory region 602032	189 bp distal
Rr602033	regulatory region 602033	1299 bp proximal
Tssr39615	transcription start site region 39615	873 bp downstream
Tssr43991	transcription start site region 43991	1024 bp upstream