rs32625298 SNP Detail

Summary

• ID
  rs32625298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149719856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTTAC CCACAGACAC
  TGTCTGTCTT TGCAGATATG AACCGACACC ATTATTCGCT CTACGTCCAC GGGTGCAGGC
  TAGTTTTCCT CCTCCGTCAG GACCCGTCTG AGGAGAAGAA ATACAGGCCT GCGGAGTTCC
  ACTGGAAGCT GAACCAAGTG AGTAGCTGAA CCTGGCCAGG TCTCATCTCT CTGGATGTGA
  Y
  AGCCTGAGGG ACACTGTGGT CTGTGTATCC GTCGGTCACA GGATGGCATA TCAGACTCTT
  TAAGCTCCTT TCCCATGTGT GCATTTTATA CATAAAATAC TAACATAAAT AGTATGTTCT
  TTTGGGGCCT AAGAGATGGC TCCCCAAGTA AAGGGACTTA TCACCAGGCC TGACAATCTG
  ATTTGGGTTT TGTTGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46706460	NES11010907	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32625298					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46706460	NES11010907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149719856 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	581 bp upstream
Rr103738	regulatory region 103738	56 bp distal
Rr103739	regulatory region 103739	745 bp proximal
Tssr40351	transcription start site region 40351	688 bp downstream
Tssr40352	transcription start site region 40352	147 bp downstream