rs32625303 SNP Detail

Summary

• ID
  rs32625303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149719881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTGCAG ATATGAACCG
  ACACCATTAT TCGCTCTACG TCCACGGGTG CAGGCTAGTT TTCCTCCTCC GTCAGGACCC
  GTCTGAGGAG AAGAAATACA GGCCTGCGGA GTTCCACTGG AAGCTGAACC AAGTGAGTAG
  CTGAACCTGG CCAGGTCTCA TCTCTCTGGA TGTGACAGCC TGAGGGACAC TGTGGTCTGT
  R
  TATCCGTCGG TCACAGGATG GCATATCAGA CTCTTTAAGC TCCTTTCCCA TGTGTGCATT
  TTATACATAA AATACTAACA TAAATAGTAT GTTCTTTTGG GGCCTAAGAG ATGGCTCCCC
  AAGTAAAGGG ACTTATCACC AGGCCTGACA ATCTGATTTG GGTTTTGTTG TTGTTGTTGT
  TGTTTTGTTT GTTTGTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46706466	NES11010909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32625303					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46706466	NES11010909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149719881 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	606 bp upstream
Rr103738	regulatory region 103738	81 bp distal
Rr103739	regulatory region 103739	720 bp proximal
Tssr40351	transcription start site region 40351	713 bp downstream
Tssr40352	transcription start site region 40352	172 bp downstream
Tssr40353	transcription start site region 40353	1976 bp upstream