rs32625392 SNP Detail

Summary

• ID
  rs32625392
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154975293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGATAGGG TGAACGCCTG CTTGCCTTCT GAAGCTGCGA
  GAGGAGCTGT AGGCGGGATC AGGTCTTCCT CTGTGGTTGT ACCCTCGGCG TCTGAAAGCT
  M
  GGTGGAGAAA AGACCTGGTG ACGCGTAGTC CCCCTCCGCC GCTTCCCTTC AGACAACAGA
  ACCGTTCTGA GCCGGACTCT AAACTGAGCG CTGCGGGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45171972	mCV25211063	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss145775301	ENSMUSSNP4692344	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32625392					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154975293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	within coordinates
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	194 bp upstream
Ier5	immediate early response 5	within coordinates
Rr28750	regulatory region 28750	within coordinates
Rr396412	regulatory region 396412	26 bp upstream
Tssr9525	transcription start site region 9525	1316 bp downstream
Tssr9526	transcription start site region 9526	1288 bp downstream
Tssr9527	transcription start site region 9527	1251 bp downstream
Tssr14335	transcription start site region 14335	1545 bp upstream
Tssr14336	transcription start site region 14336	801 bp upstream
Tssr14337	transcription start site region 14337	66 bp upstream
Tssr14338	transcription start site region 14338	3 bp upstream
Tssr14339	transcription start site region 14339	83 bp downstream