rs32626778 SNP Detail

Summary

• ID
  rs32626778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46138953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTCGCGGA GGCGGCACAG CTACGAGAAC GATGGTAAGT
  GCTCTCGGCC TGGCCACTGC GTCCGGGTGA GAACCGAGGC CGGGCTCGCC TTCAGTCTCC
  M
  GGGAACGGAT AGGAATCCTT TCTCCCCGGG AGGGCTCGGG GAGCCCCAAA GGGAGGCTGC
  TGGCTCGGTT GTGGATAGTG GCTTCGGGAA AGCGACGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45672224	mCV22985022	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss146261789	ENSMUSSNP3811571	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321104094	CHEV_4_46151825	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32626778					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46138953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	within coordinates
Ncbp1	nuclear cap binding protein subunit 1	within coordinates
Rr591548	regulatory region 591548	526 bp distal
Rr591549	regulatory region 591549	330 bp distal
Rr591550	regulatory region 591550	within coordinates
Rr591551	regulatory region 591551	228 bp distal
Tssr37109	transcription start site region 37109	432 bp downstream
Tssr37110	transcription start site region 37110	395 bp downstream
Tssr37111	transcription start site region 37111	359 bp downstream
Tssr37112	transcription start site region 37112	159 bp downstream
Tssr37113	transcription start site region 37113	121 bp downstream
Tssr41557	transcription start site region 41557	578 bp upstream
Tssr41558	transcription start site region 41558	489 bp upstream
Tssr41559	transcription start site region 41559	223 bp upstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	259 bp upstream