rs32628273 SNP Detail

Summary

• ID
  rs32628273
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:120152769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTCCTG CTTGGGAAAT
  GCGGTGTGAA TGACAAGGAC AAGAAGAAGA GGTGGCAGGG CCCAAGGGAT GGAGGCTGTG
  GAGGAGGCGG GGCTTGTGTG GAAGAAAGCC CCCATACGTA AAACACTACT TATGTCTCAA
  ACGGAAAATA TATCTGCATT TTATAGAGAA TGTTTTCAAG CCAAGGAAAA CACTTAACTC
  W
  TATTATTCGT ACTTATTTAT GCCATGGGTA GCACCCAGGG CCTTGCCGTG CTAACAAAAA
  CACTCTGCTC CAAGCTCTTG ATTTATATCT AGTAAAGTAC AGATTTGAGA GGCTATAACA
  CTATATGAAC ATCGGAAAAA TATTTTGTAA CCTGATAAGA CTAGGGATTT TTATGTATTC
  TACCATATTT GAAATATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47191099	NES11570184	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32628273					SNP	A	T	A	A	T	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47191099	NES11570184	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120152769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32916	predicted gene, 32916			Intron
				Noncoding-Transcript-Variant
Rr654730	regulatory region 654730			501 bp distal
Tssr68785	transcription start site region 68785			488 bp downstream
Tssr68786	transcription start site region 68786			472 bp downstream