rs32629162 SNP Detail

Summary

• ID
  rs32629162
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CGTACTACAG AAGATGCATA
  S
  GAGAGATTTG AGCAAGCGGG GAAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45172073	mCV22812897	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32629162					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	767 bp downstream
Rr396473	regulatory region 396473	30 bp downstream
Rr421988	regulatory region 421988	236 bp distal
Rr421989	regulatory region 421989	925 bp distal
Rr421990	regulatory region 421990	857 bp distal
Rr421991	regulatory region 421991	within coordinates
Tssr9715	transcription start site region 9715	816 bp downstream
Tssr9716	transcription start site region 9716	800 bp downstream
Tssr9717	transcription start site region 9717	717 bp downstream
Tssr9718	transcription start site region 9718	156 bp upstream
Tssr14622	transcription start site region 14622	1150 bp upstream
Tssr14623	transcription start site region 14623	107 bp upstream
Tssr14624	transcription start site region 14624	97 bp upstream
Tssr14625	transcription start site region 14625	64 bp upstream
Tssr14626	transcription start site region 14626	30 bp upstream
Tssr14627	transcription start site region 14627	1 bp downstream
Tssr14628	transcription start site region 14628	22 bp downstream
Tssr14629	transcription start site region 14629	67 bp downstream
Vamp4	vesicle-associated membrane protein 4	within coordinates