rs32629173 SNP Detail

Summary

• ID
  rs32629173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129230091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AGATCACCTT ACTAGAGAAT
  R
  AAGAAACCCG AGGCCGTATC CCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45672826	mCV22717114	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147438524	ENSMUSSNP3529218	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss321312050	CHEV_4_129013542	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32629173					SNP	A	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129230091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	294 bp distal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	928 bp upstream
Rr367701	regulatory region 367701	631 bp downstream
Rr367702	regulatory region 367702	151 bp downstream
Rr600200	regulatory region 600200	956 bp distal
Rr600201	regulatory region 600201	276 bp distal
Rr600202	regulatory region 600202	443 bp proximal
Tssr39141	transcription start site region 39141	653 bp downstream
Tssr39142	transcription start site region 39142	311 bp downstream
Tssr39143	transcription start site region 39143	257 bp downstream
Tssr43492	transcription start site region 43492	1034 bp upstream
Tssr43493	transcription start site region 43493	981 bp upstream
Tssr43494	transcription start site region 43494	921 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates