rs32630108 SNP Detail

Summary

• ID
  rs32630108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70170089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTGTGCA TCCCAGAACT TTCACAGCTT GTCTTCTTGC
  ACTCAGTAGG TACTTAAGGT TCTTCCTCTT GGAAGCCTTG TTTTTGTGCA CAGTCTATTA
  Y
  ATACACTCCC CAAGGCAGTG ATCACTTTGC CTCACAACTA GACCAGGGCC CAACCCAACC
  CCTATCACAT CGAAACAAGA CTTGATGTCC TCCGGGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46170116	mCV24416486	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145111309	ENSMUSSNP5335019	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322696654	CHEV_8_72241338	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32630108					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70170089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	287 bp distal
Gm51532	predicted gene, 51532	within coordinates
Gm64048	predicted gene, 64048	147 bp downstream
Rr186712	regulatory region 186712	within coordinates
Rr400882	regulatory region 400882	799 bp downstream
Rr400883	regulatory region 400883	273 bp downstream
Tssr77669	transcription start site region 77669	850 bp downstream
Tssr81531	transcription start site region 81531	1015 bp upstream
Tssr81532	transcription start site region 81532	947 bp upstream
Tssr81533	transcription start site region 81533	596 bp upstream
Tssr81534	transcription start site region 81534	527 bp upstream
Zfp869	zinc finger protein 869	371 bp upstream