rs32630499 SNP Detail

Summary

• ID
  rs32630499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149762385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ATGGAACCAG TTTGATTTTG
  Y
  GCTGGTCCCA TGAACCACTT GCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss46706694	NES11010108	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs32630499					SNP	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46706694	NES11010108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149762385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pik3cd	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta			Intron
				Noncoding-Transcript-Variant
Rr605004	regulatory region 605004			1895 bp distal
Rr605005	regulatory region 605005			1394 bp distal
Rr605006	regulatory region 605006			1269 bp proximal
Tssr44666	transcription start site region 44666			1863 bp upstream
Tssr44667	transcription start site region 44667			1804 bp upstream