rs32630587 SNP Detail

Summary

• ID
  rs32630587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120234141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCTGAT TATACACACA
  CGCGCAAATT TGCGCGAGAA AATTTCACGA GATTGAGTCC TTGCTGGTGA CGATCTCCTT
  GCGGCAAGGA GACCTACAAG TGTGTCGATC TGTTCGACGA GACATTCGTC CTGCCAGTTT
  CTGTGAACTC GGTCACCAAG TTCGCGGTAC CGGGAAGACT ACAGTAAAAG TGGCGAGGGA
  Y
  GACCTCCGAG GAACAGGGAG TGCCGACGAC TCCCGGACTT GCGAGGACTC ACGGGCAGGC
  CCAAGACGGC TGGGGTGACT GTGACGGCTG CAGACGCAGC TGGGATTACA GGCTGCATGT
  CTTTTGCAGA AAAAGAACTC AGAAAGGATA ACCTACAAAA GCTGCAATCT AGTCCGGGAG
  ACCTCTAGCC TCTCCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47191750	NES11592697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32630587					SNP	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47191750	NES11592697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120234141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19646	CpG island 19646	within coordinates
Gm45112	predicted gene 45112	32 bp upstream
Rr654736	regulatory region 654736	within coordinates
Rr654737	regulatory region 654737	269 bp proximal
Tssr68788	transcription start site region 68788	282 bp upstream
Uqcrc2	ubiquinol cytochrome c reductase core protein 2	271 bp upstream