rs32630593 SNP Detail

Summary

• ID
  rs32630593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120234241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCGATC TGTTCGACGA
  GACATTCGTC CTGCCAGTTT CTGTGAACTC GGTCACCAAG TTCGCGGTAC CGGGAAGACT
  ACAGTAAAAG TGGCGAGGGA CGACCTCCGA GGAACAGGGA GTGCCGACGA CTCCCGGACT
  TGCGAGGACT CACGGGCAGG CCCAAGACGG CTGGGGTGAC TGTGACGGCT GCAGACGCAG
  Y
  TGGGATTACA GGCTGCATGT CTTTTGCAGA AAAAGAACTC AGAAAGGATA ACCTACAAAA
  GCTGCAATCT AGTCCGGGAG ACCTCTAGCC TCTCCCCAGG AGCTGGGCTC GTCCCGCCTA
  CCGGAGCAGT AGAGCACTGC ATGCGTAGAG GGCCGCCGGT ACAAGGGGGC GTGGGCAAGC
  TCGCAGTGCA CACCGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47191756	NES11592701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32630593					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47191756	NES11592701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120234241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19646	CpG island 19646	within coordinates
Gm45112	predicted gene 45112	132 bp upstream
Rr654736	regulatory region 654736	within coordinates
Rr654737	regulatory region 654737	169 bp proximal
Tssr68788	transcription start site region 68788	182 bp upstream
Uqcrc2	ubiquinol cytochrome c reductase core protein 2	171 bp upstream