rs32633959 SNP Detail

Summary

• ID
  rs32633959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:4024929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AACAACAAAA AAACATACTG TTCATTTTCT GGGCAGTATG AACATTCCGG
  AGAAAGTCCG TGTGTACTTT TATTTAAAGT CTACCCTTCT CGCAGATTCG ACACCACACA
  TCTGGTCGGA TGTAAACAAA AAGGATTTCA AGGAACGTAG AAAACGCTGC ATGGGTAACA
  S
  GACATCTGAG GAGAGGGCAG ATGACTGCCC AATGGGGACC AAGCTCAGCA GTGCCAGCAC
  CAGGGACCCC GCCTCGGACC GAAGGCCGCG CCTTCTGGCC ACCGAGCGCA GCGGTCCCCT
  CGCATCTCAC CACCGTCCGC CCACTTCCCT CTGCGGCGCT CCCTCACCGT CTTCCCCCGC
  GGCTTCGCTA AGGTGCTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49379131	NES12542493	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32633959					SNP	G	G	G	G	C	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379131	NES12542493	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4024929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	within coordinates
Gm2093	predicted gene 2093	592 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	Intron
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	within coordinates
Rr498629	regulatory region 498629	287 bp proximal
Rr498630	regulatory region 498630	601 bp proximal
Tssr133595	transcription start site region 133595	202 bp upstream
Tssr133596	transcription start site region 133596	261 bp downstream