rs32636963 SNP Detail

Summary

• ID
  rs32636963
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179345030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGAGTTA CATTTGTCCG
  CACAATCTCT AGAGGGCAAA GCACACCGCG AGTCCTACGC TCCTAGAGTA GACTGTTTGC
  ATCTCTTATT TTGCTCTTTT GTTACACGGT TAATTCTCAT TTGCTCCAGT CCTTAGGGAT
  GTCTCATTCA TCTTCCTAAA CCCAAGCCAC GTAAAATCCA GACCAGCAAA GTACAACATA
  M
  ACACCAGGCT TCTCGCTCCT CCCGCAAGAC AGGTCAGGTG GGGCCTCAGT TCTGATCCTG
  ACGTACACAC CCCTACTCCT TCCCAGACTC ACACCCCCCT GCCACTTCTG ATTTCCACAA
  CCAATGAAGC TCGTTGCACA GGCTTTGAAT ATTTTTGTTC CCCAGCAAAA TTATCTGCCC
  GACGCTTCCC CTTCATCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
ss46707509	NES10668869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
rs32636963					SNP	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46707509	NES10668869	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179345030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1095	CpG island 1095	within coordinates
Rr396646	regulatory region 396646	396 bp upstream
Rr424271	regulatory region 424271	530 bp proximal
Rr424272	regulatory region 424272	574 bp proximal
Smyd3	SET and MYND domain containing 3	within coordinates
Tssr15501	transcription start site region 15501	511 bp downstream
Tssr15502	transcription start site region 15502	527 bp downstream
Tssr15503	transcription start site region 15503	563 bp downstream