rs32642471 SNP Detail

Summary

• ID
  rs32642471
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72321715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGGCAT GAGCTTGGCT
  CTCACCACGC ACACTGGGTG GCTCACACTC CAGTTCCAGG GGATCTGCCA CTTCCAGCCT
  TCATGGGCAC CTGTACTCCC ACTCACAGGC CCTCCTCTGC CTCCCAATAC ACATATATAA
  TTAAAAATAC AACAAAACTT TAAAAGAACT TTTTTTCCCA TATTCTCTCA TGGAAGGCAA
  K
  CCAATGATAA ATACAGCAGT ACAATGTTCA CTTCTCTTTT AGGTGTAGGA AGTATTTCCC
  TAGGGACATA CCCCAGGACT CTCACAGCAT CTCCAGGGCT GAGTGGCCTT ATATTTACAG
  TCATGCCACA ATACTCTGTT GGCCGACCCC AGAACTGGTG TAGTGTTTGC CCAATGCAAA
  CTTACTCAAA AAGAGGTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss45174023	mCV24093614	ABI	CRAMUS_MOUSE	f	SNP		G				T		T
ss51274580	NES14276969	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G		G		T	T	T	T
ss144651891	ENSMUSSNP5213232	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs32642471					SNP	T	G	T	T	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274580	NES14276969	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72321715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1480 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	1839 bp upstream
Tssr114	transcription start site region 114	1716 bp downstream
Tssr115	transcription start site region 115	1732 bp downstream
Tssr116	transcription start site region 116	1749 bp downstream
Tssr7298	transcription start site region 7298	1811 bp upstream
Tssr12164	transcription start site region 12164	1668 bp downstream
Tssr12165	transcription start site region 12165	1692 bp downstream