rs32643162 SNP Detail

Summary

• ID
  rs32643162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148886823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGGGTT GAGCCTAATA
  CTAGGAATGG AGGTGGGTCT GATAATGATG TAGAAAGAAA TCTGTCACCA TCCCCTTCCT
  GGCCAGGCCT TGTTCATTGT CTAATTCAGT TCTGTCTCCC ACTGTGGAGT GTTGGGCTTA
  GAAAATACAT ACTCAGTGAA TGAATGAGCA AAGGATTACT CCAAATAAAC ATAACAAAAG
  R
  AAACTAGACA GAGGACAAGA AGGGATGGGG AGAGGACTTG AAGGAAGGAG GGGTACTGGA
  TGTCCCCAGG AACAAGGACA GTTACTGGCA CTTACAGATC AATATCTTGG CCCAAGCCCT
  TTTCCTGCAT TAACCTACGT TAGTCTTGCA ACGCTCCCAG ACAGCAATAC TGTTATCAGC
  CCCATTTCTC TGTTGGGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45674576	mCV24951917	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32643162					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148886823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15311	CpG island 15311	1477 bp proximal
Rr100549	regulatory region 100549	1377 bp proximal
Rr407230	regulatory region 407230	1360 bp proximal
Tssr1379	transcription start site region 1379	1964 bp upstream
Tssr40301	transcription start site region 40301	1984 bp upstream