rs32643289 SNP Detail

Summary

• ID
  rs32643289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCGCACCT CACTATTCTG ATTGGCGGCC GGGCTGCTTC
  CTGGAGGAGG CGGCGGTCCC CTTGGCGTCC CATTGTGTCT GCGCTTACCT TTTGTCTTGG
  M
  TTTAACAGAA GGGTGGTGTG GGGTCTAGTT CGGGTTGTAC ACCTTGGATG TCCTTCACTA
  AGCATTGAGC TCTAATGGAC TCTCATCAGG AGGGAAAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45674681	mCV23912990	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss147191111	ENSMUSSNP5904420	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32643289					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691015 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	204 bp upstream
Cpgi14564	CpG island 14564	within coordinates
Cpgi14565	CpG island 14565	844 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	275 bp distal
Rr597225	regulatory region 597225	within coordinates
Rr597226	regulatory region 597226	293 bp proximal
Tssr38313	transcription start site region 38313	792 bp upstream
Tssr38314	transcription start site region 38314	829 bp upstream
Tssr38315	transcription start site region 38315	891 bp upstream
Tssr38316	transcription start site region 38316	984 bp upstream
Tssr42738	transcription start site region 42738	221 bp upstream
Tssr42739	transcription start site region 42739	192 bp upstream
Tssr42740	transcription start site region 42740	421 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	860 bp upstream