rs32644290 SNP Detail

Summary

• ID
  rs32644290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180470279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAGCAAA GAAAAAACTC GAACTCTGTA AGATGTATCT
  GTGGGCAACG CAAATATGCC TTTAAAAGAG AGATAACTCT TAATTCTGTT TTCTTTGATA
  Y
  CGTGTATTTC TTATATTGTT AAGTCAGAAG TTCAGGTTGC CAGTATTCAG AATGTTTGTG
  TTTTAATTTT GATTTAGACC AGTGCTAAGT CTCAAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45174042	mCV22719648	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss146384520	ENSMUSSNP306932	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32644290					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180470279 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1114	CpG island 1114			614 bp distal
Lin9	lin-9 DREAM MuvB core complex component			Intron
				Noncoding-Transcript-Variant
Rr424541	regulatory region 424541			1370 bp distal
Rr424542	regulatory region 424542			340 bp distal
Tssr10482	transcription start site region 10482			1340 bp downstream