rs32644291 SNP Detail

Summary

• ID
  rs32644291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36596130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CCATGCACTA GGCAGTAGGC
  M
  AACGGAACGG ATCTCCACTA ATCTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45174043	mCV27595089	ABI	CRAMUS_MOUSE	f	SNP		C			A
ss47220383	NES11095691	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A		C	C		A	C	C		C
ss148927584	ENSMUSSNP2949417	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss319688952	CHEV_1_36613894	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32644291					SNP	A	C	C	A	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47220383	NES11095691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36596130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	within coordinates
D430040D24Rik	RIKEN cDNA D430040D24 gene	652 bp upstream
Rr409349	regulatory region 409349	1335 bp distal
Rr409350	regulatory region 409350	199 bp proximal
Rr409351	regulatory region 409351	467 bp proximal
Rr409352	regulatory region 409352	1290 bp proximal
Rr409353	regulatory region 409353	1321 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	within coordinates
Tssr40	transcription start site region 40	646 bp upstream
Tssr11262	transcription start site region 11262	358 bp upstream
Tssr11263	transcription start site region 11263	468 bp downstream
Tssr11264	transcription start site region 11264	1133 bp downstream
Tssr11265	transcription start site region 11265	1165 bp downstream
Tssr11266	transcription start site region 11266	1301 bp downstream