rs32644549 SNP Detail

Summary

• ID
  rs32644549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75116586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCATCA CACTTTCTCT
  TAGAGACAAT AACATCCCAC AAGCCCAGTC TCATTCTATC CCCTTGATCC CAGGCTCACC
  GGGACACATG GGCTACATAT TTTTTCTGGA GTCGGCGAAT AGGACTGGGT GCTGCCTTCT
  GAAGAAGTTC CACAGTAATG TCTGCAAGGA GATAGAGGAG CAGAATAAGC AACTGCAACA
  Y
  ATACTGTAGT CCCCACTACT GTCAGGGAAG ACCTAGGTGT GAGGCCCTGA GGACAGGACT
  GTCAAAAAAA ACTAGAAATC AAATTCTGCT AAGACAGGAG GGAAGGCATG ATGAAACACA
  CCTGTAATCC CAAAACTCAA GACATAAGGC AGGGGGATTA CTACAAGGTG GAGGCCATCC
  AGACCTCTAC AGTGAGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45173739	mCV23611602	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss144691921	ENSMUSSNP4343012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss319795832	CHEV_1_75136516	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32644549					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75116586 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	within coordinates
Cpgi410	CpG island 410	1365 bp proximal
Gm57175	predicted gene, 57175	1663 bp upstream
Rr29645	regulatory region 29645	985 bp distal
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	1691 bp upstream
Tssr7485	transcription start site region 7485	1845 bp upstream
Tssr12349	transcription start site region 12349	542 bp upstream
Tssr12350	transcription start site region 12350	1567 bp downstream
Tssr12351	transcription start site region 12351	1576 bp downstream
Tssr12352	transcription start site region 12352	1589 bp downstream
Tssr12353	transcription start site region 12353	1630 bp downstream
Tssr12354	transcription start site region 12354	1684 bp downstream
Tssr12355	transcription start site region 12355	1787 bp downstream
Tssr12356	transcription start site region 12356	1850 bp downstream