rs32645373 SNP Detail

Summary

• ID
  rs32645373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC CAGGCCCTAG TAGCCTGCTG
  R
  AGGGAGAAGT AAGCTCCTAA ACCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46172206	mCV22795983	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		A
ss60630722	NES16282515	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A		G	A	A	A		G	A	G		A
ss145153468	ENSMUSSNP1444965	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						A
ss322705525	CHEV_8_74226498	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32645373					SNP	A	A	G	A	A	A	G	G	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630722	NES16282515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155243 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	810 bp upstream
Cpgi20570	CpG island 20570	763 bp distal
Gm18860	predicted gene, 18860	1606 bp downstream
Rr382258	regulatory region 382258	1252 bp downstream
Rr665157	regulatory region 665157	821 bp distal
Rr665158	regulatory region 665158	320 bp distal
Rr665159	regulatory region 665159	607 bp distal
Rr665160	regulatory region 665160	389 bp distal
Rr665161	regulatory region 665161	680 bp proximal
Rr665162	regulatory region 665162	681 bp proximal
Tssr81749	transcription start site region 81749	845 bp upstream
Tssr81750	transcription start site region 81750	815 bp upstream
Tssr81751	transcription start site region 81751	758 bp upstream
Tssr81752	transcription start site region 81752	7 bp downstream