rs32646246 SNP Detail

Summary

• ID
  rs32646246
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT TTGGTGAATA TTATTCCTAA
  K
  CAGATGTGAA ATGACTTCCT CTTAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46172311	mCV24073374	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss145084088	ENSMUSSNP4757631	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322692312	CHEV_8_71406413	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32646246					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	890 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664456	regulatory region 664456	913 bp distal
Rr664457	regulatory region 664457	412 bp distal
Rr664458	regulatory region 664458	558 bp distal
Rr664459	regulatory region 664459	47 bp proximal
Tssr77601	transcription start site region 77601	1950 bp downstream
Tssr77602	transcription start site region 77602	1872 bp downstream
Tssr77603	transcription start site region 77603	1842 bp downstream
Tssr77604	transcription start site region 77604	1797 bp downstream
Tssr77605	transcription start site region 77605	1784 bp downstream
Tssr77606	transcription start site region 77606	1833 bp upstream
Tssr77607	transcription start site region 77607	1899 bp upstream
Tssr77608	transcription start site region 77608	1920 bp upstream
Tssr77609	transcription start site region 77609	1955 bp upstream