rs32646480 SNP Detail

Summary

• ID
  rs32646480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12328404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAACT AACCCTGAAG
  TTAGTAAGGG TTGCCACATG TAACTCACTG TGCGGAGCTG GCTCTTGGTC AGCCCATTGT
  TTGGCTGTTT ATTTTTTGAG AATTTTAATA TGGAGGGATT CACACCAAAT CAAAGCTGTC
  CCCTTGTAAG ATGCACACAC AAATGGAGGC TTCGAAGAAT CGACTTGAGG ACTCCCTGTG
  W
  GGTGTCCTAG AATCGGTCGC CCCTTCTCAT AGGCGTTAGT AGAAAGGATG GTGTCGCATC
  AAATCTCTGT GGAGATGAGG AAAGGTTCTT TGCCCAGCTT CAGCACACGC AGGGCACAGA
  GCAGCGCCAT AAACACCAGC AGTTTATGAC ATGGCAAGAG GAAAAACAAG CAAGCAAACA
  AATATGTAAG GGCCGAGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46172715	mCV24317888	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss60572189	NES16031348	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		T	A	A	A		T	A	T	T		A
ss148676542	ENSMUSSNP3172593	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
ss322497658	CHEV_8_12278404	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32646480					SNP	T	T	A	A	A	A	A	A	T	A	A	A	A	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572189	NES16031348	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12328404 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	421 bp upstream
Rr659697	regulatory region 659697	155 bp proximal