rs32648343 SNP Detail

Summary

• ID
  rs32648343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76365576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAAAGC ATTCCAATCA
  CACTGTTAAT CTGTGTGCAT ACTTCCTTTA AAGTAACTCT GCTTCCTTTG TCTTCTAAAC
  CTGCCTTGTG TAAGCAATAT CCTTATCAGA CCAATTAGGA AAAGTTATTT ATGTTTTCTT
  TTCTTGTTTT ATTTTACCAT AAACTAAGAA ACAGGCATTG AATAAGAATC TGCATAAGTA
  W
  TTTTTTTTTT GTTTCAGAGT CTATATGAAA AATCACCCTA ATACCAGAGT ACCATAGATT
  ACCTAAATAA AATTCTTGAA ATATCCTTTA ATCAGCCTTC ACAGCTAATG TCAGAGCATG
  GGTTGGGGAT TTTCAAAAGG AAAAAGAAAA AAACTTACAG AACTGCCTAC TTGAATTTTT
  CTTAAATGTC TTCTAGGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45675143	mCV24416641	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss146590054	ENSMUSSNP1822688	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321170948	CHEV_4_76093243	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32648343					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76365576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	1989 bp proximal
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr90206	regulatory region 90206	25 bp proximal
Rr101140	regulatory region 101140	24 bp proximal