rs32649529 SNP Detail

Summary

• ID
  rs32649529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69542471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATCTAATTA TTGGGAAAAG AGGAACCAAA AATCGAGTTT CTTAATCCTT TGCTTGGTCT
  TCTGTTGTTT ATTCGTTTAC TGACCAGCTA ACCAAACGCA GTTAAATGGA AGGTTGCTTT
  CCACTGTTAT GTTCATAGGC TTAAGTGTAG TGATCATAAA AGACCTCAAT AAGCCATGTT
  TAGACAAGCC AGTCATTCCC AAATGGCTCT TGTTGGCTGA AGCTTTCGGT TGTATAGAAT
  CAAACCTCTT CACGGCTCCC TTAAAGCCAG GCAGAGAGCT TTGAAAGAAG ACTTTTTTTT
  Y
  CCTCTTTTTT AAGTATCTGT TGTTTTCCTG AAAATAAGGT TCCATTTGCA CAGGTTAATT
  GGCAGCTTGG CTCTGTGGGT GGCTCATTGG TTAAAAGCGT TTCAGCTGAA GGGTTTTAGC
  TAGGCGCCCT CCAGCCTGAC TAATCCTGTC CTGAGCTGTC AGTGGGTCAT GTGATAACAC
  TGCAGCGAGG GGAAGGGAAA AAAAAAAAAA AAAAACACAC ACATTGGAGA GTGGATTGCT
  GAGGTGTGCC TTTTAAGCAT TTTTTTAGAA TAATTGTTAA AATTAGAGAA TGCCTGTTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46172358	mCV22776461	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss50565127	NES14071316	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32649529					SNP	C	C	T	C	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565127	NES14071316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69542471 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	405 bp distal
Rr400869	regulatory region 400869	1032 bp downstream
Rr664484	regulatory region 664484	1163 bp distal
Rr664485	regulatory region 664485	107 bp distal
Rr664486	regulatory region 664486	1032 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	584 bp upstream
Tssr77656	transcription start site region 77656	1092 bp downstream
Tssr77657	transcription start site region 77657	1075 bp downstream
Tssr77658	transcription start site region 77658	1023 bp downstream
Tssr81518	transcription start site region 81518	604 bp upstream