rs32650233 SNP Detail

Summary

• ID
  rs32650233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66360980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACC AGAAGTCCCC ATGGCAAACC
  R
  CTAAATCCTA AGCCAGAGGC AGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45174878	mCV24304786	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss144494128	ENSMUSSNP4817247	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319754072	CHEV_1_66368395	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs32650233					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66360980 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	455 bp downstream
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	92 bp distal
Rr412443	regulatory region 412443	within coordinates
Rr412444	regulatory region 412444	1269 bp proximal
Tssr7142	transcription start site region 7142	106 bp downstream
Tssr7143	transcription start site region 7143	82 bp downstream
Tssr7144	transcription start site region 7144	65 bp downstream
Tssr7145	transcription start site region 7145	15 bp downstream
Tssr7146	transcription start site region 7146	1 bp downstream
Tssr7147	transcription start site region 7147	4 bp upstream
Tssr7148	transcription start site region 7148	150 bp upstream
Tssr7149	transcription start site region 7149	170 bp upstream
Tssr7150	transcription start site region 7150	200 bp upstream
Tssr7151	transcription start site region 7151	225 bp upstream
Tssr7152	transcription start site region 7152	258 bp upstream
Tssr7153	transcription start site region 7153	287 bp upstream