rs32650676 SNP Detail

Summary

• ID
  rs32650676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38704068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCGCCCG AGTGCACAGT
  CCTAGGCTTC ACCCACAACT CCCGAAAGTA CCGAGACACA GACCCACTTA CCTCTCAACA
  CACTCTTGGT TTTATTTTTT TCCTGTTCCA AATAAATTGT TCGGCTTCTC TCTTCTGTGT
  ACGGATCCCT CCTCGCTGGC AAGCGTTCTG AATGGCACTT TCTGCACAAA CAGGAAGAGC
  Y
  TGTGTGGTCA CCACCCAAGT GTGCAGGTGT TGATAGAGGA TGTGAAAGTG TGGAGGCGAC
  GGACTACGGC AGACACCCAG CCCCCTGCTC CTACCCGCCC CAGGGCAGAC TGGTAACAGA
  GCCTGGACAC ACAGCTTGAG AGATCTCCTG ACAAGAACAT AGATTGAGAT ACACAGTCAT
  GGTGGCCAGG GGCAAAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45175702	mCV24885316	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss60719308	NES16354839	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32650676					SNP	C	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719308	NES16354839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38704068 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	32 bp upstream
Rr366875	regulatory region 366875	within coordinates
Rr409724	regulatory region 409724	1868 bp distal
Rr409725	regulatory region 409725	43 bp distal
Rr409726	regulatory region 409726	within coordinates
Rr409727	regulatory region 409727	556 bp proximal
Rr409728	regulatory region 409728	1264 bp proximal
Tssr11346	transcription start site region 11346	54 bp upstream
Tssr11347	transcription start site region 11347	42 bp upstream
Tssr11348	transcription start site region 11348	within coordinates
Tssr11349	transcription start site region 11349	18 bp downstream
Tssr11350	transcription start site region 11350	36 bp downstream
Tssr11351	transcription start site region 11351	605 bp downstream