rs32651399 SNP Detail

Summary

• ID
  rs32651399
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148888621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG TGTAGAAACC TTCCGGAACC
  S
  CACAAGGGAG CAGCGCGCTC TGATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45675770	mCV24952144	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss148019820	ENSMUSSNP5227695	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C		G
ss321423037	CHEV_4_148178273	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32651399					SNP	C	C	C	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148888621 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	265 bp upstream
Cpgi15311	CpG island 15311	within coordinates
Rr100549	regulatory region 100549	within coordinates
Rr407230	regulatory region 407230	within coordinates
Tssr1379	transcription start site region 1379	166 bp upstream
Tssr40301	transcription start site region 40301	186 bp upstream
Tssr40302	transcription start site region 40302	256 bp upstream
Tssr40303	transcription start site region 40303	286 bp upstream