rs32652529 SNP Detail

Summary

• ID
  rs32652529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC GATGGAGAAC GGCACCCGGT
  Y
  CTGGGAAGAG CGCCCACCCG CGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46172835	mCV24193296	ABI	CRAMUS_MOUSE	f	SNP	T				C	T
ss60644223	NES16269466	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T			T	T		C	T	T
ss145392099	ENSMUSSNP2359953	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T
ss322751352	CHEV_8_87213684	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs32652529					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644223	NES16269466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1749 bp distal
Cpgi20706	CpG island 20706	within coordinates
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1886 bp upstream
Rr666573	regulatory region 666573	1894 bp distal
Rr666575	regulatory region 666575	1550 bp distal
Rr666576	regulatory region 666576	311 bp distal
Rr666577	regulatory region 666577	542 bp distal
Rr666578	regulatory region 666578	7 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	482 bp downstream
Tssr78431	transcription start site region 78431	467 bp downstream
Tssr82114	transcription start site region 82114	1901 bp upstream
Tssr82115	transcription start site region 82115	1875 bp upstream