rs32654054 SNP Detail

Summary

• ID
  rs32654054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGGA GGCATCCTCT
  TTCAAACTCA GCTCTCTGTT CCTCAGACAC ATGACTCTAC AGACTGCAGG CTGAGCTCTG
  CCCTGTGCCG TCCATCCTGG CCAGCCAGGA CACTGTCTGT GCTTCTCCTT GTGAGGGAAC
  AGGCCAAGTT TCTAGAAATG ACTGACACTG TCCGGTCCGA GGCTTGAAGA AGCTCGCTCT
  Y
  GGAAGAACGG GTATACAGAG CAGCAGAACC CAGGCAACAG CAGGGATATG CAGCGGAGAC
  CTTAGAAGGT TCCAGGATAG CCCACATGCA CACACATGTT ATAGACACGT GTCTACACAC
  GTCCCTGTGC ACACACTGTC ACGGGAGATC AAGACGTGCC CTCAAGCCCT CAATCTTCTT
  CCTCATGAAC TAGGAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47695024	NES11323111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32654054					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695024	NES11323111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864748 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	651 bp upstream
Cpgi21698	CpG island 21698	983 bp proximal
Rr678012	regulatory region 678012	161 bp proximal
Rr678013	regulatory region 678013	1517 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1877 bp upstream
Tssr89292	transcription start site region 89292	566 bp upstream
Tssr89293	transcription start site region 89293	223 bp downstream
Tssr89294	transcription start site region 89294	1516 bp downstream
Tssr89295	transcription start site region 89295	1720 bp downstream
Tssr89296	transcription start site region 89296	1746 bp downstream
Tssr89297	transcription start site region 89297	1776 bp downstream
Tssr89298	transcription start site region 89298	1803 bp downstream
Tssr89299	transcription start site region 89299	1829 bp downstream