rs32654056 SNP Detail

Summary

• ID
  rs32654056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCAAGT TTCTAGAAAT
  GACTGACACT GTCCGGTCCG AGGCTTGAAG AAGCTCGCTC TTGGAAGAAC GGGTATACAG
  AGCAGCAGAA CCCAGGCAAC AGCAGGGATA TGCAGCGGAG ACCTTAGAAG GTTCCAGGAT
  AGCCCACATG CACACACATG TTATAGACAC GTGTCTACAC ACGTCCCTGT GCACACACTG
  Y
  CACGGGAGAT CAAGACGTGC CCTCAAGCCC TCAATCTTCT TCCTCATGAA CTAGGAAAGC
  AGCAAGAAGC TCCGGTTCCA CTGCTACTCT GGAGGCCAGA GCCCTGCAGG GAGGGGTGTA
  GGGAACTGTG TCGAAATACA AGTTGTCTCT CTAGTTCTGA CCATGGGCCA AGCTCTGAAG
  TGACTTTCCA TCTGAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47695026	NES11323112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32654056					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695026	NES11323112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			512 bp upstream
Cpgi21698	CpG island 21698			844 bp proximal
Rr678012	regulatory region 678012			22 bp proximal
Rr678013	regulatory region 678013			1378 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr84819	transcription start site region 84819			1738 bp upstream
Tssr89292	transcription start site region 89292			705 bp upstream
Tssr89293	transcription start site region 89293			84 bp downstream
Tssr89294	transcription start site region 89294			1377 bp downstream
Tssr89295	transcription start site region 89295			1581 bp downstream
Tssr89296	transcription start site region 89296			1607 bp downstream
Tssr89297	transcription start site region 89297			1637 bp downstream
Tssr89298	transcription start site region 89298			1664 bp downstream
Tssr89299	transcription start site region 89299			1690 bp downstream