rs32654410 SNP Detail

Summary

• ID
  rs32654410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93269639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC ATACACAGGC ACATGCACTC
  R
  GTATGTGATC CTAAAAAGCA ACAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45176112	mCV27561196	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss144957761	ENSMUSSNP4265055	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss319843452	CHEV_1_95238494	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32654410					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93269639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	572 bp proximal
Pask	PAS domain containing serine/threonine kinase	within coordinates
Ppp1r7	protein phosphatase 1, regulatory subunit 7	1711 bp upstream
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	744 bp upstream
Rr396176	regulatory region 396176	1506 bp upstream
Tssr163	transcription start site region 163	1765 bp upstream
Tssr8169	transcription start site region 8169	1701 bp upstream
Tssr13015	transcription start site region 13015	645 bp downstream
Tssr13016	transcription start site region 13016	665 bp downstream
Tssr13017	transcription start site region 13017	692 bp downstream
Tssr13018	transcription start site region 13018	705 bp downstream
Tssr13019	transcription start site region 13019	817 bp downstream
Tssr13020	transcription start site region 13020	951 bp downstream
Tssr13021	transcription start site region 13021	984 bp downstream
Tssr13022	transcription start site region 13022	1581 bp downstream