rs32654459 SNP Detail

Summary

• ID
  rs32654459
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80632870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGAATG ATCAAATAGC
  TCACTTCAAA CTCTGCCTGA GGCAAGGGCT CGCGGGCTGG GGAACTTGAA AGACAGAGCT
  GAGAGAGATT CTGGCTAGGC TTCCGTTCCT CAGAAGAAAC TCAAAGAAGT GTCTAGGCTG
  GCTATGGCCC TCACCGGGTC AGGTGCTGAG CCAATTTTGA GCCCTGAGAC TCCTGTCTCT
  K
  ATGGCTTTGA GCCTTTTATT CCTTGGTTGA AAGACAGGAG CCACCCAAAC TGAACCATGC
  TCCTGTGTCC CCTGAGACAT CCACAAACAG GAGGCCACTA GGAATGGGAC TGGTAGATAC
  CCAAACCTTG AGGGTCACCT TAGAGTTTCT TCCTCTGCTC AGACTCTGCA AGGACTCTCC
  CATCCTTCAC AGCAACAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47194674	NES11226078	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32654459					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47194674	NES11226078	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80632870 () rs orientation: forward

Symbol	Name	Function Class
4933406B15Rik	RIKEN cDNA 4933406B15 gene	within coordinates
Galnt16	polypeptide N-acetylgalactosaminyltransferase 16	within coordinates
Rr257781	regulatory region 257781	670 bp distal
Rr261567	regulatory region 261567	670 bp distal
Rr261568	regulatory region 261568	270 bp distal