rs32656904 SNP Detail

Summary

• ID
  rs32656904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC TGGGCTGCAG TGGTATTAAA
  R
  GTAAACAGCT CTCCAGTCCT ACAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47695014	NES11323106	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A	A
ss136420879	ENSMUSSNP3531675	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32656904					SNP	A	G	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695014	NES11323106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863939 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1460 bp upstream
Cpgi21698	CpG island 21698	1792 bp proximal
Gm68914	predicted gene, 68914	1389 bp downstream
Rr678012	regulatory region 678012	970 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	218 bp downstream
Tssr89293	transcription start site region 89293	1032 bp downstream