rs32656910 SNP Detail

Summary

• ID
  rs32656910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACCTGG CAAGGATGCC
  CCTCCCTACA TCCCCAGGTC TTACTCACAG TCCTCGAAGG ATTAGGGGCA CCTGGAAGGA
  CACAACAGCC TCCTTCTGGC GGACCACAAA CAGCAAAGGC GCCCCTTTCT GCTTGTTCAG
  GACATTCACA GACACTCGCA CACCCTCGGT CTGCAGAGAA GGAGGCATCC TCTTTCAAAC
  Y
  CAGCTCTCTG TTCCTCAGAC ACATGACTCT ACAGACTGCA GGCTGAGCTC TGCCCTGTGC
  CGTCCATCCT GGCCAGCCAG GACACTGTCT GTGCTTCTCC TTGTGAGGGA ACAGGCCAAG
  TTTCTAGAAA TGACTGACAC TGTCCGGTCC GAGGCTTGAA GAAGCTCGCT CTTGGAAGAA
  CGGGTATACA GAGCAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47695020	NES11323109	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	T	T	T
ss136420897	ENSMUSSNP5309066	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32656910					SNP	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695020	NES11323109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			824 bp upstream
Cpgi21698	CpG island 21698			1156 bp proximal
Rr678012	regulatory region 678012			334 bp proximal
Rr678013	regulatory region 678013			1690 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr89292	transcription start site region 89292			393 bp upstream
Tssr89293	transcription start site region 89293			396 bp downstream
Tssr89294	transcription start site region 89294			1689 bp downstream
Tssr89295	transcription start site region 89295			1893 bp downstream
Tssr89296	transcription start site region 89296			1919 bp downstream
Tssr89297	transcription start site region 89297			1949 bp downstream
Tssr89298	transcription start site region 89298			1976 bp downstream