rs32658787 SNP Detail

Summary

• ID
  rs32658787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155927096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT TTCTTCCAGC AACTGGGCTA
  Y
  GTGTTGGCCA CGCTGCTGCT CTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45676251	mCV24239047	ABI	CRAMUS_MOUSE	f	SNP		C	C				T
ss46784487	NES10993680	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		C	C	T		T	C		C
ss148117710	ENSMUSSNP5176350	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321443293	CHEV_4_155216748	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs32658787					SNP	C	C	C	C	C	T	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784487	NES10993680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155927096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	476 bp distal
Gm68629	predicted gene, 68629	709 bp upstream
Mxra8	matrix-remodelling associated 8	within coordinates
Rr398927	regulatory region 398927	1155 bp downstream
Tssr40729	transcription start site region 40729	1531 bp downstream
Tssr40730	transcription start site region 40730	1501 bp downstream
Tssr40731	transcription start site region 40731	1472 bp downstream
Tssr40732	transcription start site region 40732	1464 bp downstream
Tssr40733	transcription start site region 40733	1163 bp downstream
Tssr40734	transcription start site region 40734	412 bp upstream
Tssr44980	transcription start site region 44980	1584 bp upstream
Tssr44981	transcription start site region 44981	1535 bp upstream