rs32661594 SNP Detail

Summary

• ID
  rs32661594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120631402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTTAAA ACAAAACATA
  TTCTCATAAT ATTTATGTTT TTTTAAATAG AAACCAAAAT TCTTACTATA GGGGAGGACA
  CCCGAAGTCA ATCTCTTTCA CACATACATA CATACACACC CACATGCATG TATATACAAA
  AAAACTGGAG AAAAACATTA AATTACAGGA GTCCTTTTAG ACTATTAGCT CCACAAGGAG
  K
  CTACAATGGT TTTAAGTCTT CTGCAAATCC ATGCCTCTAG CTTTCTGTGG TTTTTCTTCA
  CATTGTACTG TGAAGTTGAA AAGCAAATCT CAAGTTAGGA GTGGCAGCAC ATTCTTGTGA
  TCCCTGTGTT TGTGAGGCAT AGTCAGGATG ATTGTGAGTT CAAGGCCAGC TTAGCCTGTA
  TAACAAGGAC TGATGAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47196145	NES11572980	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32661594					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47196145	NES11572980	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120631402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	1855 bp proximal
D7Mit240	DNA segment, Chr 7, Massachusetts Institute of Technology 240	719 bp distal
Gm9905	predicted gene 9905	1073 bp downstream
Gm72635	predicted gene, 72635	314 bp upstream
Rr166622	regulatory region 166622	1598 bp proximal
Rr168961	regulatory region 168961	599 bp proximal
Tssr68809	transcription start site region 68809	294 bp upstream
Tssr68810	transcription start site region 68810	576 bp upstream
Tssr68811	transcription start site region 68811	597 bp upstream
Tssr68812	transcription start site region 68812	612 bp upstream