rs32661597 SNP Detail

Summary

• ID
  rs32661597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120631408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACATACA CACCCACATG CATGTATATA CAAAAAAACT
  GGAGAAAAAC ATTAAATTAC AGGAGTCCTT TTAGACTATT AGCTCCACAA GGAGGCTACA
  R
  TGGTTTTAAG TCTTCTGCAA ATCCATGCCT CTAGCTTTCT GTGGTTTTTC TTCACATTGT
  ACTGTGAAGT TGAAAAGCAA ATCTCAAGTT AGGAGTGGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47196148	NES11572983	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32661597					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47196148	NES11572983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120631408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	1849 bp proximal
D7Mit240	DNA segment, Chr 7, Massachusetts Institute of Technology 240	725 bp distal
Gm9905	predicted gene 9905	1067 bp downstream
Gm72635	predicted gene, 72635	308 bp upstream
Rr166622	regulatory region 166622	1592 bp proximal
Rr168961	regulatory region 168961	593 bp proximal
Tssr68809	transcription start site region 68809	288 bp upstream
Tssr68810	transcription start site region 68810	570 bp upstream
Tssr68811	transcription start site region 68811	591 bp upstream
Tssr68812	transcription start site region 68812	606 bp upstream