rs32661603 SNP Detail

Summary

• ID
  rs32661603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120631870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTATGTGA CTCTTGAGTG TTAATACCTA CATTTCAAAG
  CCACATTGGA AAGGATATTG CCTCATCTTT GGCTTTCTGT ATTAGGGGTG TCTCTTGCTA
  W
  TCCCATCATG GATAACTGAG GTTTTAATGT ACAGTAGTGA CATCCTAGTA GCAGGCCTGA
  GGGCAATCTG AACTTCTGCT TAGTATATTT ACTCTTGCAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47196154	NES11572934	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32661603					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47196154	NES11572934	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120631870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	1387 bp proximal
D7Mit240	DNA segment, Chr 7, Massachusetts Institute of Technology 240	1187 bp distal
Gm9905	predicted gene 9905	605 bp downstream
Gm72635	predicted gene, 72635	within coordinates
Mettl9	methyltransferase like 9	1798 bp upstream
Rr166622	regulatory region 166622	1130 bp proximal
Rr168961	regulatory region 168961	131 bp proximal
Rr400600	regulatory region 400600	1738 bp upstream
Tssr68809	transcription start site region 68809	127 bp downstream
Tssr68810	transcription start site region 68810	108 bp upstream
Tssr68811	transcription start site region 68811	129 bp upstream
Tssr68812	transcription start site region 68812	144 bp upstream
Tssr68813	transcription start site region 68813	1769 bp upstream
Tssr68814	transcription start site region 68814	1873 bp upstream
Tssr68815	transcription start site region 68815	1895 bp upstream
Tssr68816	transcription start site region 68816	1934 bp upstream
Tssr74531	transcription start site region 74531	1776 bp downstream