rs32663153 SNP Detail

Summary

• ID
  rs32663153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179789512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTAAAC ATGGACTTTC
  CAAAAATCAC TAGGTTCCTG AGAAATAATA GAAATTATGT GTATGTGTGT GTGTAAAAAG
  ATGTAGTTGG AGGATGTTTG GAGGCAGCTC CACCTGCCTT AGATTTTATT CTAAATTGAA
  TTTGTGTCTA TACTGGCTAG ATGTGACCCA GGTGACCTAT AGTAGTGGAC TAGATCAGTG
  R
  TGCGGGCAAA CTCTGCATGT GACCTTCAAG GCTTGTCTGA ACTCCAGGAG CCTCTGATGT
  CACTCACTCG TGTGAGGGAA GTCTGACATC CAGCAGTGGC CATCACTGCC CAGGCTGGTA
  GAGAGTGGTA CCATAGCTCT GGAAGGATTT AGGCCATTTA GAATTTTGAG CTGTTGAAAT
  ACTTTTAGCT AGCTAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46711838	NES10683139	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32663153					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711838	NES10683139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179789512 () rs orientation: forward

Symbol	Name	Function Class
Cdc42bpa	CDC42 binding protein kinase alpha	within coordinates
Cpgi1100	CpG island 1100	1217 bp distal
Rr29078	regulatory region 29078	within coordinates
Tssr10433	transcription start site region 10433	1966 bp downstream
Tssr10434	transcription start site region 10434	1867 bp downstream
Tssr10435	transcription start site region 10435	1168 bp downstream