rs32664037 SNP Detail

Summary

• ID
  rs32664037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46038138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAGAA CGAAATTCAC
  ATTTCCATTT AGAAATCAAG TCCTGTGTGG TTTCTAGCTG TTCCTTGATG ACCCAGTTTT
  CTCCCTAAGA CTCTCCCTCT GGGTGGGATA TGTGAGGGGC TCTCTTGAGT TGTAAGTGAT
  GTTGAAATTG AACTTTTTCT AATTCTTAGC AGCGTCTTTG CTTCTCAGCT TATCGGATTA
  Y
  AGGACCATGC CTCTGAAGCA GTAAATGTTC CCATTTCCCC TTTCTCACAG TAATATCTGT
  CCCTTCCCCA TGCCTTGTGC CCTTTAAGCA GGGCTGTTAC CGTCAGAATC ACTGGTTCTG
  CTGGACCAGC CTGCCGCCTG TGTCACATCG CTCTCTTGCT TTTGCGCAGG TCATGGAGAC
  AGAGCGCATG ATTTACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46313026	mCV25177548	ABI	CRAMUS_MOUSE	f	SNP	T	T						C		C
ss47696252	NES11312339	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	T	C	C	T	C
ss136423313	ENSMUSSNP31932	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32664037					SNP	T	T	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47696252	NES11312339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46038138 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	114 bp distal
Rr678057	regulatory region 678057	579 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	393 bp upstream