rs32664169 SNP Detail

Summary

• ID
  rs32664169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172040417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGCCTCTC ACCAGAGCAC TGCTTTTCAG CTTTGGTACA
  TTGCCTGTCT GCCTCTGCTC CGGGAATCAC ATCTCATATC CCATGCAGTT CACTTCCCAT
  Y
  CCCTTCCCCC CTTTGCTCAG GATGCCCATG CTCTGTGTCT GCGGTGCTCG TGAGCATGCA
  GCAGGCATAC TTCCTGGATC CCCAGCTAGG AAGTGGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45177790	mCV23614851	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss120007486	PARCsnp_1.17821	PARC_SEQ	INBRED	f	SNP		C	T
ss120010398	PARCsnp_1.07466	PARC_SEQ	INBRED	f	SNP		C	T
ss146184075	ENSMUSSNP1693284	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32664169					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172040417 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Rr423487	regulatory region 423487	696 bp proximal
Tssr15175	transcription start site region 15175	828 bp upstream
Tssr15176	transcription start site region 15176	214 bp downstream
Tssr15177	transcription start site region 15177	268 bp downstream
Tssr15178	transcription start site region 15178	292 bp downstream
Tssr15179	transcription start site region 15179	314 bp downstream
Tssr15180	transcription start site region 15180	519 bp downstream
Tssr15181	transcription start site region 15181	1095 bp downstream