rs32665025 SNP Detail

Summary

• ID
  rs32665025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46038638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTCTTA GCCGCTGTCT
  CAGCTGTCGC CTGATGCTGC AATCTATGCC ATCATGGTAA TTTCAGCATT TTTTTTTTTT
  TTTTTTTTTT TTTTTGGCTC GGCCAGTTAA ATCCCTCCAC TGTGTTTATT CTTGAGCAAA
  GGTGTTTTGT TTGATCTAGT TTGATGTTAA CAGCTGAGAT AAAAGATCTC AGAACCAAAC
  W
  TTGCTGCCAT TCATGTGCCT GAGGGGCTTT CCTGTTACCA GGCTGCAGCT GAGGTTGCCG
  GGGTGATGGA GATCCCACTT GTGTGGGAGC CCCTGGTGTG AGGAAGGGCC CTACATTCTT
  AACCCTTGTT TAAATATAAC CTTGAAACCT GTCCCTTGCT GTGCGCACAC AGTCCCGGAA
  GGCTCTGATT ACTTGCCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47696260	NES11312343	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32665025					SNP	T	A	A	A	A	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47696260	NES11312343	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46038638 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	614 bp distal
Rr678057	regulatory region 678057	79 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	103 bp downstream